Publications

 

2020-2015 (Full list on Google Scholar)

 

Title
Citations
Year
Physical techniques shed light on the differences in sugarcane bagasse structure subjected to steam explosion pretreatments at equivalent combined severity factors

MCE Santo, DH Fockink, VOA Pellegrini, FEG Guimaraes, ER deAzevedo, …
Industrial Crops and Products 158, 113003
2020
Transformation of xylan into value-added biocommodities using Thermobacillus composti GH10 xylanase

AGV Sepulchro, VOA Pellegrini, L Briganti, EA de Araujo, SS de Araujo, …
Carbohydrate Polymers 247, 116714
2020
Functional characterization of a novel thermophilic exo-arabinanase from Thermothielavioides terrestris

J Velasco, B Oliva, AL Gonçalves, AS Lima, G Ferreira, BA França, …
Applied Microbiology and Biotechnology 104 (19), 8309-8326
2020
Enzymatic versatility and thermostability of a new aryl-alcohol oxidase from Thermothelomyces thermophilus M77

MAS Kadowaki, PMR Higasi, MO de Godoy, EA de Araujo, AS Godoy, …
Biochimica et Biophysica Acta (BBA)-General Subjects 1864 (10), 129681
2020
Enzymes for lignocellulosic biomass polysaccharides valorization and production of nanomaterials

VOA Pellegrini, AGV Sepulchro, I Polikarpov
Current Opinion in Green and Sustainable Chemistry, 100397
2020
Low-resolution molecular shape, biochemical characterization and emulsification properties of a halotolerant esterase from Bacillus licheniformis

AET Leite, L Briganti, EA de Araújo, VOA Pellegrini, CM Camilo, …
European Biophysics Journal 49 (6), 435-447
2020
Liquid ammonia pretreatment optimization for improved release of fermentable sugars from sugarcane bagasse

M Hans, S Garg, VOA Pellegrini, JG Filgueiras, ER de Azevedo, …
Journal of Cleaner Production, 123922
2020
Enhanced hydrolysis of hydrothermally and autohydrolytically treated sugarcane bagasse and understanding the structural changes leading to improved saccharification

KK Brar, MCE Santo, VOA Pellegrini, ER deAzevedo, FEC Guimaraes, …
Biomass and Bioenergy 139, 105639
2020
A linker of the proline-threonine repeating motif sequence is bimodal

MS Skaf, I Polikarpov, IM Stanković
Journal of molecular modeling 26 (7), 1-7
2020
A simple enzymatic assay for the quantification of C1-specific cellulose oxidation by lytic polysaccharide monooxygenases

MB Keller, C Felby, CA Labate, VOA Pellegrini, P Higasi, RK Singh, …
Biotechnology Letters 42 (1), 93-102
4 2020
Essential metabolic routes as a way to eskape from antibiotic resistance

ALC Barra, CD Lívia de Oliveira, LG Morão, RF Gutierrez, I Polikarpov, …
Frontiers in Public Health 8
1 2020
The structure of the extended E2 DNA‐binding domain of the bovine papillomavirus‐1

L Leroy, JARG Barbosa, G de Prat‐Gay, I Polikarpov, CB Pinheiro
Proteins: Structure, Function, and Bioinformatics 88 (1), 106-112
2020
Characterization of Pretreated Fractions and Cellulosic Ethanol Production from Steam-Exploded Eucalyptus urograndis

LM Chiarello, CE A. Ramos, LFF dos Santos, MHL Silveira, S Zaccaron, …
Energy & Fuels 34 (1), 535-545
2019
A novel thermostable GH5 β-xylosidase from Thermogemmatispora sp. T81

A Tomazini, P Higasi, LR Manzine, M Stott, R Sparling, DB Levin, …
New biotechnology 53, 57-64
2019
Multifaceted characterization of sugarcane bagasse under different steam explosion severity conditions leading to distinct enzymatic hydrolysis yields

MC do Espirito Santo, EB Cardoso, FEG Guimaraes, ER DeAzevedo, …
Industrial Crops and Products 139, 111542
4 2019
Novel nadh-dependent enzyme mutants to convert acetone into isopropanol

VL Queiroz, LP Parizzi, IE Gouvea, DN Okamoto, RVC GUIDO, …
US Patent App. 16/378,209
2019
Structural insights into the hydrolysis pattern and molecular dynamics simulations of GH45 subfamily a endoglucanase from Neurospora crassa OR74A

MAS Kadowaki, I Polikarpov
Biochimie 165, 275-284
2019
Biochemical characterization and low-resolution SAXS shape of a novel GH11 exo-1, 4-β-xylanase identified in a microbial consortium

DE Evangelista, VOA Pellegrini, ME Santo, S McQueen-Mason, NC Bruce, …
Applied microbiology and biotechnology 103 (19), 8035-8049
2019
A review on bioprocessing of paddy straw to ethanol using simultaneous saccharification and fermentation

M Hans, S Kumar, AK Chandel, I Polikarpov
Process Biochemistry 85, 125-134
6 2019
Crystallographic structure and molecular dynamics simulations of the major endoglucanase from Xanthomonas campestris pv. campestris shed light on its oligosaccharide products …

AC Puhl, ET Prates, FR Rosseto, LR Manzine, I Stankovic, SS de Araújo, …
International journal of biological macromolecules 136, 493-502
1 2019
Structure and dynamics of Trichoderma harzianum Cel7B suggest molecular architecture adaptations required for a wide spectrum of activities on plant cell wall polysaccharides

MT Sonoda, AS Godoy, VOA Pellegrini, MAS Kadowaki, AS Nascimento, …
Biochimica et Biophysica Acta (BBA)-General Subjects 1863 (6), 1015-1026
1 2019
Carbohydrate binding modules enhance cellulose enzymatic hydrolysis by increasing access of cellulases to the substrate

A Bernardes, VOA Pellegrini, F Curtolo, CM Camilo, BL Mello, MA Johns, …
Carbohydrate polymers 211, 57-68
15 2019
Enzymatic and Catalytic Deconstruction

A Stenbæk, I Polikarpov
41st Symposium on Biotechnology for Fuels and Chemicals
2019
Recombinant production and structural studies of a serine peptidase from Scopulariopsis koningii

R Pedezzi, DE Evangelista, I Polikarpov, H Cabral
The FASEB Journal 33 (1_supplement), 467.1-467.1
2019
Cloud gaming device handover

RR Colenbrander
US Patent 10,238,965
10 2019
Exploring oyster mushroom (Pleurotus ostreatus) substrate preparation by varying phase I composting time: changes in bacterial communities and physicochemical …

FR Vieira, JA Pecchia, F Segato, I Polikarpov
Journal of applied microbiology 126 (3), 931-944
4 2019
Biochemical characterization and low-resolution SAXS structure of two-domain endoglucanase BlCel9 from Bacillus licheniformis

EA de Araújo, M de Oliveira Neto, I Polikarpov
Applied microbiology and biotechnology 103 (3), 1275-1287
1 2019
SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale

V Piiadov, E Ares de Araújo, M Oliveira Neto, AF Craievich, I Polikarpov
Protein Science 28 (2), 454-463
32 2019
Functional characterization and comparative analysis of two heterologous endoglucanases from diverging subfamilies of glycosyl hydrolase family 45

GL Berto, J Velasco, CTC Ribeiro, LM Zanphorlin, MN Domingues, …
Enzyme and microbial technology 120, 23-35
6 2019
Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans

K Besser, GP Malyon, WS Eborall, GP da Cunha, JG Filgueiras, A Dowle, …
Nature communications 9 (1), 1-14
10 2018
Low-resolution envelope, biophysical analysis and biochemical characterization of a short-chain specific and halotolerant carboxylesterase from Bacillus licheniformis

AM Nakamura, MAS Kadowaki, A Godoy, AS Nascimento, I Polikarpov
International journal of biological macromolecules 120, 1893-1905
4 2018
Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies

AM Alessi, SM Bird, NC Oates, Y Li, AA Dowle, EH Novotny, …
Biotechnology for biofuels 11 (1), 166
12 2018
Characterization of a new glyoxal oxidase from the thermophilic fungus Myceliophthora thermophila M77: hydrogen peroxide production retained in 5-hydroxymethylfurfural oxidation

MAS Kadowaki, MO Godoy, PS Kumagai, AJ Costa-Filho, A Mort, …
Catalysts 8 (10), 476
4 2018
GH43 endo-arabinanase from Bacillus licheniformis: Structure, activity and unexpected synergistic effect on cellulose enzymatic hydrolysis

EGS Farro, AET Leite, IA Silva, JG Filgueiras, ER de Azevedo, …
International journal of biological macromolecules 117, 7-16
6 2018
Functional characterization of a lytic polysaccharide monooxygenase from the thermophilic fungus Myceliophthora thermophila

MAS Kadowaki, A Varnai, JK Jameson, AE T. Leite, AJ Costa-Filho, …
PloS one 13 (8), e0202148
16 2018
High-frequency isolation alternating/direct current conversion circuit and control method thereof

L Li, J Liu, YAN Sha
US Patent 10,050,552
2 2018
Structural and biochemical characterization of a GH3 β-glucosidase from the probiotic bacteria Bifidobacterium adolescentis

RN Florindo, VP Souza, LR Manzine, CM Camilo, SR Marana, …
Biochimie 148, 107-115
14 2018
Biochemical characterization, low-resolution SAXS structure and an enzymatic cleavage pattern of BlCel48 from Bacillus licheniformis

EA de Araújo, LR Manzine, V Piiadov, MAS Kadowaki, I Polikarpov
International journal of biological macromolecules 111, 302-310
4 2018
Biochemical and biophysical characterization of novel GH10 xylanase prospected from a sugar cane bagasse compost-derived microbial consortia

DE Evangelista, MAS Kadowaki, BL Mello, I Polikarpov
International journal of biological macromolecules 109, 560-568
11 2018
Cellulose fiber size defines efficiency of enzymatic hydrolysis and impacts degree of synergy between endo-and exoglucanases

VOA Pellegrini, A Bernardes, CA Rezende, I Polikarpov
Cellulose 25 (3), 1865-1881
5 2018
Structural and compositional changes in sugarcane bagasse subjected to hydrothermal and organosolv pretreatments and their impacts on enzymatic hydrolysis

ME Santo, CA Rezende, OD Bernardinelli, N Pereira Jr, AAS Curvelo, …
Industrial Crops and Products 113, 64-74
34 2018
Structure, computational and biochemical analysis of Pc Cel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members

AS Godoy, CS Pereira, MP Ramia, RL Silveira, CM Camilo, MA Kadowaki, …
Scientific reports 8 (1), 1-14
7 2018
Biochemical and structural insights into a thermostable cellobiohydrolase from Myceliophthora thermophila

MAS Kadowaki, P Higasi, MO de Godoy, RA Prade, I Polikarpov
The FEBS journal 285 (3), 559-579
7 2018
Biochemical characterization and low-resolution SAXS structure of an exo-polygalacturonase from Bacillus licheniformis

DE Evangelista, EA de Araujo, MO Neto, MAS Kadowaki, I Polikarpov
New biotechnology 40, 268-274
5 2018
Structural insights into β-glucosidase transglycosylation based on biochemical, structural and computational analysis of two GH1 enzymes from Trichoderma harzianum

RN Florindo, VP Souza, HS Mutti, C Camilo, LR Manzine, SR Marana, …
New biotechnology 40, 218-227
17 2018
Valorization of sugarcane bagasse ash (SCBA) with high quartz content as pozzolanic material in portland cement mixtures

AM Pereira, JCB Moraes, MJB Bassan de Moraes, JL Akasaki, …
Materiales de Construcción 68 (330), 153-163
7 2018
Analysis of carbohydrate-active enzymes in Thermogemmatispora sp. strain T81 reveals carbohydrate degradation ability

A Tomazini Jr, S Lal, R Munir, M Stott, B Henrissat, I Polikarpov, …
Canadian journal of microbiology 64 (12), 992-1003
2 2018
Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1, 4-β-xylanase activity

BL Mello, AM Alessi, DM Riaño-Pachón, ER Deazevedo, FEG Guimarães, …
Biotechnology for biofuels 10 (1), 254
11 2017
Structural and biochemical data of Trichoderma harzianum GH1 β-glucosidases

RN Florindo, VP Souza, HS Mutti, LRM Margarido, C Camilo, SR Marana, …
Data in brief 15, 340-343
1 2017
Conformational variability of the stationary phase survival protein E from Xylella fastidiosa revealed by X‐ray crystallography, small‐angle X‐ray scattering studies …

ATP Machado, EMB Fonseca, MA Reis, AM Saraiva, CA Santos, …
Proteins: Structure, Function, and Bioinformatics 85 (10), 1931-1943
2017
Potential of oleaginous yeast Trichosporon sp., for conversion of sugarcane bagasse hydrolysate into biodiesel

KK Brar, AK Sarma, M Aslam, I Polikarpov, BS Chadha
Bioresource technology 242, 161-168
20 2017
Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis

F Mandelli, MB Couger, DAA Paixão, CB Machado, CM Carnielli, …
Extremophiles 21 (4), 775-788
14 2017
An alternative conformation of ERβ bound to estradiol reveals H12 in a stable antagonist position

PCT Souza, LC Textor, DC Melo, AS Nascimento, MS Skaf, I Polikarpov
Scientific reports 7 (1), 1-11
15 2017
Biofísica estrutural dos receptores nucleares e proteínas relacionadas

I Polikarpov
2017
Structure and function of enzymes and auxiliary proteins from Trichoderma, active in cell-wall hydrolysis

I Polikarpov
2017
Estudos estruturais de proteínas usando luz síncrotron

I Polikarpov
2017
EMU: facility para estudos avançados de materiais nanoestruturados e biossistemas/FAMA

I Polikarpov
2017
Produção heteróloga, caracterização e engenharia de Xilose isomerases para aplicação na fermentação industrial de pentoses.

I Polikarpov
1 2017
Revealing the insoluble metasecretome of lignocellulose-degrading microbial communities

AM Alessi, SM Bird, JP Bennett, NC Oates, Y Li, AA Dowle, I Polikarpov, …
Scientific Reports 7 (1), 1-10
18 2017
Estabelecimento de uma colaboração para estudos sistemáticos de proteínas transportadoras presentes em membranas através da cristalografia de macromoléculas

I Polikarpov
2017
Crystal structure of a small heat-shock protein from Xylella fastidiosa reveals a distinct high-order structure

EMB Fonseca, V Scorsato, ML dos Santos, AT Júnior, SFS Tada, …
Acta Crystallographica Section F: Structural Biology Communications 73 (4 …
5 2017
Cloning, heterologous expression and biochemical characterization of a non-specific endoglucanase family 12 from Aspergillus terreus NIH2624

F Segato, B Dias, GL Berto, DM de Oliveira, FHM De Souza, AP Citadini, …
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1865 (4), 395-403
23 2017
Ionic diodes based on regenerated alpha-cellulose films deposited asymmetrically onto a microhole

BDB Aaronson, DP He, E Madrid, MA Johns, JL Scott, L Fan, J Doughty, …
Chem Select 2, 871-875
10 2017
Regenerated Cellulose Hydrogels as Bioaffinity Attachment Supports for Carbohydrate-Binding Module 1

M Johns, A Bernardes, E Ribeiro De Azevêdo, F Guimarães, J Lowe, …
University of Bath
2017
Cellulose ionics: switching ionic diode responses by surface charge in reconstituted cellulose films

BDB Aaronson, D Wigmore, MA Johns, JL Scott, I Polikarpov, F Marken
Analyst 142 (19), 3707-3714
8 2017
On the subtle tuneability of cellulose hydrogels: implications for binding of biomolecules demonstrated for CBM 1

MA Johns, A Bernardes, ER De Azevêdo, FEG Guimarães, JP Lowe, …
Journal of Materials Chemistry B 5 (21), 3879-3887
15 2017
Structural diversity of carbohydrate esterases

AM Nakamura, AS Nascimento, I Polikarpov
Biotechnology Research and Innovation 1 (1), 35-51
41 2017
The effect of lime pre-treatments of date palm leaves on delignification and in vitro rumen degradability

M Ghorbani, F Ahmadi, AR Rad, MJ Zamiri, JW Cone, I Polikarpov
The Journal of Agricultural Science 155 (1), 184-190
2 2017
Erratum: Corrigendum: Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism

MV Liberato, RL Silveira, ÉT Prates, EA De Araujo, VOA Pellegrini, …
Scientific reports 6 (1), 1-1
2016
Nutrient availability shapes the microbial community structure in sugarcane bagasse compost-derived consortia

BL Mello, AM Alessi, S McQueen-Mason, NC Bruce, I Polikarpov
Scientific reports 6, 38781
24 2016
Biochemical Characterization and Low-Resolution SAXS Molecular Envelope of GH1 β-Glycosidase from Saccharophagus degradans

H Brognaro, VM Almeida, EA de Araujo, V Piyadov, MAM Santos, …
Molecular biotechnology 58 (12), 777-788
6 2016
Target analysis of microbial lignocellulytic secretomes: a new approach to enzyme discovery

I Polikarpov
2016
A novel carbohydrate-binding module from sugar cane soil metagenome featuring unique structural and carbohydrate affinity properties

BM Campos, MV Liberato, TM Alvarez, LM Zanphorlin, GC Ematsu, …
Journal of Biological Chemistry 291 (45), 23734-23743
10 2016
Crystal structure of β1→6‐galactosidase from Bifidobacterium bifidum S17: trimeric architecture, molecular determinants of the enzymatic activity and its inhibition …

AS Godoy, CM Camilo, MA Kadowaki, HS Muniz, M Espirito Santo, …
The FEBS Journal 283 (22), 4097-4112
10 2016
Efficient sugar production from sugarcane bagasse by microwave assisted acid and alkali pretreatment

Z Zhu, CA Rezende, R Simister, SJ McQueen-Mason, DJ Macquarrie, …
Biomass and bioenergy 93, 269-278
69 2016
Design of an enzyme cocktail consisting of different fungal platforms for efficient hydrolysis of sugarcane bagasse: optimization and synergism studies

J Méndez Arias, LFA Modesto, I Polikarpov, N Pereira Jr
Biotechnology Progress 32 (5), 1222-1229
19 2016
Biophysical and biochemical studies of a major endoglucanase secreted by Xanthomonas campestris pv. campestris.

FR Rosseto, LR Manzine, M de Oliveira Neto, I Polikarpov
Enzyme and Microbial Technology 91, 1-7
11 2016
Centro de processos biológicos e industriais para biocombustíveis-CeProBIO

I Polikarpov
2016
Structural dataset for the PPARγ V290M mutant

AC Puhl, P Webb, I Polikarpov
Data in brief 7, 1430-1437
1 2016
Non-productive adsorption of bacterial β-glucosidases on lignins is electrostatically modulated and depends on the presence of fibronection type III-like domain

VM da Silva, AS de Souza, DR Negrão, I Polikarpov, FM Squina, …
Enzyme and Microbial Technology 87, 1-8
14 2016
Sistema de injeção de gases para retores [ie reatores] de agitação pneumática

I Polikarpov, P Sejeghim Júnior, PAS Monteiro
República Federativa do Brasil-Ministério do Desenvolvimento, Indústria e do …
2016
Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism

MV Liberato, RL Silveira, ÉT Prates, EA De Araujo, VOA Pellegrini, …
Scientific reports 6, 23473
21 2016
Crystal structure of a putative exo-β-1, 3-galactanase from Bifidobacterium bifidum S17

AS Godoy, MZT de Lima, CM Camilo, I Polikarpov
Acta Crystallographica Section F: Structural Biology Communications 72 (4 …
1 2016
HTP-OligoDesigner: an online primer design tool for high-throughput gene cloning and site-directed mutagenesis

CM Camilo, GMA Lima, FV Maluf, RVC Guido, I Polikarpov
Journal of Computational Biology 23 (1), 27-29
11 2016
Pre-treatment of sugarcane bagasse with a combination of sodium hydroxide and lime for improving the ruminal degradability: optimization of process parameters using response …

F Ahmadi, MJ Zamiri, M Khorvash, E Ziaee, I Polikarpov
Journal of Applied Animal Research 44 (1), 287-296
15 2016
Sugarcane waste as a valuable source of lipophilic molecules

TM Attard, CR McElroy, CA Rezende, I Polikarpov, JH Clark, AJ Hunt
Industrial Crops and Products 76, 95-103
35 2015
Xanthomonas campestris expansin-like X domain is a structurally disordered beta-sheet macromolecule capable of synergistically enhancing enzymatic efficiency of cellulose …

AT Junior, LG Dolce, M de Oliveira Neto, I Polikarpov
Biotechnology letters 37 (12), 2419-2426
10 2015
Quantitative 13C MultiCP solid-state NMR as a tool for evaluation of cellulose crystallinity index measured directly inside sugarcane biomass

OD Bernardinelli, MA Lima, CA Rezende, I Polikarpov, ER deAzevedo
Biotechnology for biofuels 8 (1), 110
59 2015
Recombinant Trichoderma harzianum endoglucanase I (Cel7B) is a highly acidic and promiscuous carbohydrate-active enzyme

VOA Pellegrini, VI Serpa, AS Godoy, CM Camilo, A Bernardes, …
Applied microbiology and biotechnology 99 (22), 9591-9604
18 2015
Synthesis of Analogues of Thyroid Hormones: Nuclear Receptor Modulators

GV de Castro, CMR Rocha, VL Sanches, PHZ Ribeiro, PM Donate, …
Orbital: The Electronic Journal of Chemistry 7 (3), 282-291
2015
Medalha Nacional do Mérito Científico 2008

I Polikarpov
2015
A novel member of GH16 family derived from sugarcane soil metagenome

TM Alvarez, MV Liberato, JPLF Cairo, DAA Paixão, BM Campos, …
Applied biochemistry and biotechnology 177 (2), 304-317
8 2015
Different binding and recognition modes of GL479, a dual agonist of Peroxisome Proliferator-Activated Receptor α/γ

JC dos Santos, A Bernardes, L Giampietro, A Ammazzalorso, …
Journal of structural biology 191 (3), 332-340
28 2015
Oligonucleotídeos para produção de endoglucanase, sequências para produção de endoglucanase, processo de obtenção de endoglucanase e usos da endoglucanase

I Polikarpov, VOA Pellegrini, VI Serpa
República Federativa do Brasil-Ministério do Desenvolvimento, Indústria e do …
2015
Draft genome sequence of the thermophile Thermus filiformis ATCC 43280, producer of carotenoid-(di) glucoside-branched fatty acid (di) esters and source of hyperthermostable …

F Mandelli, BO Ramires, MB Couger, DAA Paixão, CM Camilo, …
Genome announcements 3 (3)
4 2015
Response to Moras et al.

F Rastinejad, V Ollendorff, I Polikarpov
Trends in Biochemical Sciences 40 (6), 290-292
1 2015
Functional Characterization and Low-Resolution Structure of an Endoglucanase Cel45A from the Filamentous Fungus Neurospora crassa OR74A: Thermostable …

MAS Kadowaki, CM Camilo, AB Muniz, I Polikarpov
Molecular Biotechnology 57 (6), 574-588
13 2015
Otimização de estratégias de pré-tratamento de bagaço de cana-de-açúcar para produção de etanol de segunda geração via hidrólise enzimática

E Santo
Universidade de São Paulo
2015
Crystal structure analysis of peroxidase from the palm tree Chamaerops excelsa

A Bernardes, LC Textor, JC Santos, NH Cuadrado, EY Kostetsky, …
Biochimie 111, 58-69
17 2015
Combination of sodium hydroxide and lime as a pretreatment for conversion of date palm leaves into a promising ruminant feed: an optimization approach

AR Rad, F Ahmadi, T Mohammadabadi, E Ziaee, I Polikarpov
Waste and Biomass Valorization 6 (2), 243-252
6 2015

 

 

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